species:   Rhsol
pid:       PID0516
parent:    Rhi-milR-168
paralog:   
locus:     KB317711.1:275026-275119
matures:   ['UUGGCUUGAAUAUCUUGGUGAUGG', 'GUUCCAAGUUCAUUCUUUCU']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317711.1:275026-275119

62 out of bounds
246 alignments
246 proper strand
242 stranded perfect matches

         ************************                         ***************************         
UAGGUGAGUUGACGUUCCAAGUUCAUUCUUUCUAUCCUCAAUAUGAUGUUUGUGAGGCAUUUGGCUUGAAUAUCUUGGUGAUGGAGCCCAUCGC
..((((.(((..(((((((((((((..((......(((((..(......)..))))).....))..))))...))))).)))).))).))))..
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGG---------- l=24 a=14 c
-------------GUUCCAAGUUCAUUCUUUCU------------------------------------------------------------- l=20 a=0 c*
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGA--------- l=25 a=48 ma
-----------ACGUUCCAAGUUCAUUCUUUCU------------------------------------------------------------- l=22 a=0 ma*

--------------------------------------CAAUAUGAUGUUUGUGAGG------------------------------------- l=19 a=4 
--------------------------------------CAAUAUGAUGUUUGUGAGGC------------------------------------ l=20 a=7 
--------------------------------------CAAUAUGAUGUUUGUGAGGCA----------------------------------- l=21 a=1 
--------------------------------------CAAUAUGAUGUUUGUGAGGCAUUU-------------------------------- l=24 a=1 
---------------------------------------AAUAUGAUGUUUGUGAGGCA----------------------------------- l=20 a=1 
---------------------------------------------------------CAUUUGGCUUGAAUAUCUUGGUGAUGG---------- l=27 a=3 
---------------------------------------------------------CAUUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=28 a=1 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUG----------- l=25 a=7 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUGG---------- l=26 a=1 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=27 a=8 
----------------------------------------------------------AUUUGGCUUGAAUAUCUUGGUGAUGGAG-------- l=28 a=2 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGG---------- l=25 a=4 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGGA--------- l=26 a=20 
-----------------------------------------------------------UUUGGCUUGAAUAUCUUGGUGAUGGAG-------- l=27 a=3 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGU--------------- l=19 a=1 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUG-------------- l=20 a=1 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAU------------ l=22 a=2 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUG----------- l=23 a=5 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGG---------- l=24 a=14 (c)
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUcG---------- l=24 a=1 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGA--------- l=25 a=48 (ma)
------------------------------------------------------------UUuGCUUGAAUAUCUUGGUGAUGGA--------- l=25 a=1 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGAG-------- l=26 a=12 
------------------------------------------------------------UUGGCUUGAAUAUCUUGGUGAUGGAGC------- l=27 a=1 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUG----------- l=22 a=3 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUGG---------- l=23 a=5 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUGGA--------- l=24 a=30 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUGGAG-------- l=25 a=3 
-------------------------------------------------------------UGGCUUGAAUAUCUUGGUGAUGGAGC------- l=26 a=1 
--------------------------------------------------------------GGCUUGAAUAUCUUGGUGAUGG---------- l=22 a=1 
--------------------------------------------------------------GGCUUGAAUAUCUUGGUGAUGGA--------- l=23 a=9 
--------------------------------------------------------------GGCUUGAAUAUCUUGGUGAUGGAG-------- l=24 a=2 
---------------------------------------------------------------GCUUGAAUAUCUUGGUGAUG----------- l=20 a=4 
---------------------------------------------------------------GCUUGAAUAUCUUGGUGAUGG---------- l=21 a=1 
---------------------------------------------------------------GCUUGAAUAUCUcGGUGAUGGA--------- l=22 a=1 
---------------------------------------------------------------GCUUGAAUAUCUUGGUGAUGGA--------- l=22 a=30 
---------------------------------------------------------------GCUUGAAUAUCUUGGUGAUGGAG-------- l=23 a=1 
---------------------------------------------------------------GCUUGAAUAUCUUGGUGAUGGAGg------- l=24 a=1 
----------------------------------------------------------------CUUGAAUAUCUUGGUGAUGGA--------- l=21 a=4 
-------------------------------------------------------------------GAAUAUCUUGGUGAUGGAG-------- l=19 a=1 

mb-01011
ax-1001001
ku-01
ss-101011101110
fn-111
